For the cookie cups, in a small to medium bowl whisk flour, baking soda, salt, and spices, set aside.
Preheat oven to 350°. Spray two mini cupcake pans with pam baking spray (48 total indentations) then line 1 cookie sheet with parchment paper and set aside.
In the bowl of a stand mixer, cream butter, brown sugar, and granulated sugar until light and fluffy. Then beat in the molasses, milk, and vanilla extract.
Gradually beat flour mixture into creamed mixture.
Using a medium cookie scoop create rounded dough balls, add one ball to each of the 48 mini cupcake indents and slightly press the balls down into the indent, don’t make a well just a lightly push down. With the remaining dough, you should get 12 more dough balls, place them 2-in. apart on parchment-lined baking sheets. Slightly smoosh down with your hand.
Bake twelve cookies, take 10-15 minutes, or until edges begin to set. The cookie cups take 20-25 mins to bake. Cool the twelve cookies on pans for 5 minutes. Remove to wire racks to cool completely. When cookie cups are set take them out and while still hot create an indent with the handle of a wooden spoon. Cool the cookie cups in the pan for 5 mins-10 mins, until you can take them out of the cups, allow to cool completely on the counter or wire racks.
If you haven’t already made your Pumpkin pudding do so, you can use my homemade pumpkin pudding recipe or Jello brand, make sure your pudding is set prior to assembly.
If making whipped cream, with your hand mixer or whisk whip heavy cream, sugar, and vanilla extract until whip cream texture.
For a neat assembly, you will want to grab 2 small/medium Ziplocs or 2 pipping bags. Line 2 short cups with the opened Ziplocs and fill one with pudding and one with whipped cream. Close the bags making sure to release the air inside.
Take the pumpkin pudding bag and cut a piece small off of one of the bottom corners, then pipe into cookie cups.
Once you are done evenly filling the molasses cookie cups with pudding, cut a smaller piece off of one of the bottom corners of the whipped cream bag. Add a little squirt/dollop to the tops of each cookie cup and if you like having a little crumble on top crumble 1-2 cookies and sprinkle on top of each cup.